Publications

Selected publications by the Structural bioinformatics research group:

• Hutařová Vařeková,I., Hutař,J., Midlik,A., Horský,V., Hladká,E., Svobodová,R. and Berka,K. (2021) 2DProts: database of family-wide protein secondary structure diagrams. Bioinformatics, btab505.

• Raček,T., Schindler,O., Toušek,D., Horský,V., Berka,K., Koča,J. and Svobodová,R. (2020) Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic Acids Res., 48, W591–W596.

• Pravda,L., Sehnal,D., Toušek,D., Navrátilová,V., Bazgier,V., Berka,K., Svobodová Vařeková,R., Koča,J. and Otyepka,M. (2018) MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). Nucleic Acids Res., 46, W368–W373.

• Sehnal,D., Bittrich,S., Deshpande,M., Svobodová,R., Berka,K., Bazgier,V., Velankar,S., Burley,S.K., Koča,J. and Rose,A.S. (2021) Mol∗ Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res., 49, W431–W437.

• Sehnal,D., Deshpande,M., Svobodová Vařeková,R., Mir,S., Berka,K., Midlik,A., Pravda,L., Velankar,S. and Koča,J. (2017) LiteMol suite: Interactive web-based visualization of large-scale macromolecular structure data. Nat. Methods, 14, 1121–1122.

For more details, see the Web of Science ResearcherID E-2867-2021 of Radka Svobodová (group leader).